Prep: First, preheat oven to 350°F (175°C) and line a muffin tin with 12 paper liners.
Crust: In a small bowl, mix the almond flour, melted butter, and salt. Divide among the 12 liners and press down firmly. Bake for 5 minutes. Remove and let cool slightly.
Filling Base: Next, in a large bowl, beat the softened cream cheese and Greek yogurt until completely smooth and lump-free.
Add Wet Ingredients: Add the maple syrup, eggs, and vanilla. Mix on low speed until just combined. Do not overmix.
Bake: Pour the filling evenly over the crusts. Bake for 18-20 minutes until the centers are set but slightly jiggly.
Chill: Remove from oven and cool in the pan for 30 minutes. Transfer to the refrigerator to chill for at least 2 hours to fully set.